Bioinformatician

The University of Iowa

Job Reference #: 21002774

The selected candidate will be responsible for performing bioinformatics analyses of sequencing data to support infectious disease investigations of public health significance conducted by the State Hygienic Lab. The candidate will have the capacity to characterize harmful pathogens, such as SARS-CoV-2, influenza, antibiotic-resistant bacteria, and outbreak strains at the genome level and provide public health data to drive surveillance, disease intervention, and treatment. 

The Bioinformatician will provide specialized sequencing and bioinformatics support for several infectious disease sequencing programs. The sequencing data generated will provide real time surveillance for foodborne, healthcare associated infections, and other infectious disease outbreaks. Qualified candidates will have expertise in pathogen genomics and experience building bioinformatics pipelines using workflow managers and containerized algorithms. The c andidate will be required to collaborate with molecular biologists and epidemiologists on analyses of next-generation sequencing (NGS) data; develop, implement, and maintain high-quality pipelines for the processing of NGS data; make modifications to existing algorithms and software and writing scripts to implement software on a server or high-performance computing environment; evaluate NGS data analysis methods published in peer-reviewed literature, and extend them to develop and deploy state-of-the-art NGS data analysis solutions; use data analyses to refine and optimize the design of assays (e.g. PCR primers); develop automated analysis reports or live dashboards that include visualizations; and prepares reports, publications, and other communications of analysis results and interpretation.

Position Status: 3 Year Specified Term

For additional information and a detailed job description, please visit the departmental website at:
http://www.shl.uiowa.edu/jobs/

About the State Hygienic Laboratory
The State Hygienic Laboratory’s main facilities are headquartered on the University of Iowa's Research Park campus northwest of Iowa City in Coralville. Additional testing facilities are part of the Iowa Laboratory Facilities in Ankeny, a Des Moines suburb.

Since 1904, the State Hygienic Laboratory has been at the forefront of public health issues in Iowa. As the state’s public health and environmental laboratory, the Hygienic Laboratory serves all of Iowa’s 99 counties through disease detection, environmental monitoring, and newborn and maternal screening.
Qualifications:

Education or Equivalency Required
A PhD degree in bioinformatics, biostatistics, computer science, biology, engineering or related field is required.

Required Qualifications
•    Knowledge and understanding of either computational and biological issues.
•    Proficiency in at least one scripting language, such as R or Python.
•    Programming and data analysis experience with Linux.
•    Familiarity with public bioinformatics resources and tools.
•    Knowledge of best-practice data presentation methods for internal and external audiences.
•    Ability to easily integrate into and collaborate with a multidisciplinary team.
•    Excellent communication, interpersonal, and relationship management skills.
•    Demonstrated experience with, or commitment to diversity in the work, academic, or laboratory environment.

Desirable Qualifications
•    Previous experience with NGS data analysis.
•    Previous public health laboratory experience.
•    Considerable knowledge of the theory and application of next generation sequencing, sanger sequencing, and bioinformatics.
•    Considerable knowledge of other molecular detection and characterization methods.
•    Experience authoring or editing laboratory documents or grants.
•    Experience presenting information to a variety of audiences.
•    Experience with computers or laboratory information management systems.

Contact: Sarah Tillman (sarah-tillman@uiowa.edu)

The University of Iowa is an equal opportunity/affirmative action employer. All qualified applicants are encouraged to apply and will receive consideration for employment free from discrimination on the basis of race, creed, color, national origin, age, sex, pregnancy, sexual orientation, gender identity, genetic information, religion, associational preference, status as a qualified individual with a disability, or status as a protected veteran.

Application Instructions:

Application Details and Instructions:
Upload the following required documents and mark them as a “Relevant File” to the submission:
•    Cover Letter
•    Resume

Job openings are posted for a minimum of 14 calendar days and may be removed from posting and filled any time after the original posting period has ended. Successful candidates will be subject to a criminal background check and verification of academic credentials. Up to 5 professional references will be requested at a later step in the recruitment process.

Job ID: 75297

Posted 10 days ago

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